rs261540414 SNP Detail

Summary

• ID
  rs261540414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82221827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGGAAGC GTTCCCAGGC
  CAGCCAGCCC ATGGGTGGAG TCCGCAGTAG CCCATTCTCC AGCATCAGTA CCTGAGCCAC
  CAGGGCCAGT AAGAGCACTG AGGGGGAGGT GGATGGTGAC TTGTAAATGG TTCCTACAGC
  ACCCCACCCC CCAACCCCAG TCATCACCTC AACCCCTCCA GCCCTTCAGC CCTCCCCAGG
  Y
  ACAGGCCAGT AGGGTTAGAG TTGCCTCAGC CTGTGAGTGC AGTCTGGGGG GGGGGGTACA
  TGGGGCAAAG TAATGTATTC AAAAAGCTGT TGCTACAGAC TGGGAATCAA TGGAACGGAC
  CCCTGAAGTC ATGTCCTTGA TATACATGAG ACCAGATGCC CTCTTCCCTC CCTCCCTACA
  CAGAAATGAC AGTTCATTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394738984	MGP_WTSI_15_82168056	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261540414					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394738984	MGP_WTSI_15_82168056	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82221827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	1025 bp proximal
Naga	N-acetyl galactosaminidase, alpha	within coordinates
Pheta2	PH domain containing endocytic trafficking adaptor 2	1321 bp upstream
Rr506479	regulatory region 506479	1146 bp proximal
Rr506480	regulatory region 506480	1344 bp proximal
Rr506481	regulatory region 506481	1478 bp proximal
Tssr4669	transcription start site region 4669	1238 bp downstream
Tssr135542	transcription start site region 135542	606 bp upstream
Tssr135543	transcription start site region 135543	1144 bp downstream
Tssr135544	transcription start site region 135544	1175 bp downstream
Tssr135545	transcription start site region 135545	1231 bp downstream