rs261541128 SNP Detail

Summary

• ID
  rs261541128
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41491539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAGGAGA GACCATGAGC TGAACCAAGG ACTGTGTATG
  AGCTGAACCT ACAGAGGTGA GGAAAAAAAG AAAAGTTTTG TATGTGTCTG TGGTGTGTGT
  S
  TGTCTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTTGGGGAG
  GTGTTCTAAA CAGACCATGT AGTGAAGGAA AAGACACGG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322927319	CHEV_9_41388326	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261541128					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41491539 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	1665 bp upstream
Gm51670	predicted gene, 51670	972 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1683 bp upstream
Rr677060	regulatory region 677060	739 bp distal
Rr677061	regulatory region 677061	255 bp distal
Rr677062	regulatory region 677062	6 bp proximal
Rr677063	regulatory region 677063	1109 bp proximal
Rr677064	regulatory region 677064	1223 bp proximal
Rr677065	regulatory region 677065	1439 bp proximal
Rr677066	regulatory region 677066	1770 bp proximal
Rr677067	regulatory region 677067	1897 bp proximal
Tssr84512	transcription start site region 84512	574 bp downstream
Tssr84513	transcription start site region 84513	526 bp downstream
Tssr84514	transcription start site region 84514	351 bp downstream
Tssr84515	transcription start site region 84515	276 bp downstream
Tssr84516	transcription start site region 84516	252 bp downstream
Tssr84517	transcription start site region 84517	226 bp downstream
Tssr84518	transcription start site region 84518	460 bp upstream
Tssr84519	transcription start site region 84519	508 bp upstream
Tssr84520	transcription start site region 84520	660 bp upstream
Tssr84521	transcription start site region 84521	701 bp upstream
Tssr84522	transcription start site region 84522	725 bp upstream
Tssr84523	transcription start site region 84523	823 bp upstream
Tssr84524	transcription start site region 84524	1004 bp upstream
Tssr84525	transcription start site region 84525	1057 bp upstream
Tssr84526	transcription start site region 84526	1088 bp upstream
Tssr84527	transcription start site region 84527	1757 bp upstream
Tssr88995	transcription start site region 88995	720 bp upstream
Tssr88996	transcription start site region 88996	680 bp upstream
Tssr88997	transcription start site region 88997	543 bp downstream