rs261541290 SNP Detail

Summary

• ID
  rs261541290
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:84409158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGGTGGT GTCAGGAGGA
  GGCCTAGTGG GCTCTGCCAT GGCTTGTGCC TTAGGTAGGT GCATCTCGAC CGCGGGCTGG
  AGGATCTGGG CTGTGGAGGG ACGGTACTCA CAGTGGAGGT CGGGACGCTG TCCAGACACC
  TAACGTGCCT GACCTGGTGC TTTGCTCACT GTCCTTCCAG GGGAGTCCTC GGGAATGGCA
  K
  GGGTTCTGCG GGATCACAAG TGGGCGGGCC TTTCTAAGTC AGTCTGACCC TTGAGAACTG
  TCCAGGATTG TTTATGAGCA CCTCGAGAGG CATCGGGCTT TGTAGTATCG GATGGTAGAT
  CGGATTGACC TCGAAATCAC AGAGATCATC TTCCTCAGTC TTCTGAGTGC TGGGATTAAG
  GCCCGCGCCC CCACTCCTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386712691	MGP_WTSI_12_85703334	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261541290					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386712691	MGP_WTSI_12_85703334	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84409158 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq6	coenzyme Q6 monooxygenase			Intron
				Noncoding-Transcript-Variant
Cpgi4867	CpG island 4867			within coordinates
Fam161b	family with sequence similarity 161, member B			551 bp upstream
Rr403407	regulatory region 403407			370 bp downstream
Rr469628	regulatory region 469628			717 bp distal
Rr469629	regulatory region 469629			970 bp distal
Rr469630	regulatory region 469630			335 bp distal
Tssr114338	transcription start site region 114338			741 bp downstream
Tssr114339	transcription start site region 114339			366 bp downstream
Tssr114340	transcription start site region 114340			328 bp downstream
Tssr116998	transcription start site region 116998			587 bp upstream
Tssr116999	transcription start site region 116999			546 bp upstream