rs261566553 SNP Detail

Summary

• ID
  rs261566553
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:73995981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGA CACCCTCCAC CCCTCACCAA
  W
  CTTTTTCTTG AGATTCCCAA ATTCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324432757	CHEV_13_73985310	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261566553					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:73995981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5855	CpG island 5855	within coordinates
Gm30303	predicted gene, 30303	within coordinates
Nkd2	naked cuticle 2	231 bp upstream
Rr482617	regulatory region 482617	132 bp distal
Rr482618	regulatory region 482618	within coordinates
Tssr123198	transcription start site region 123198	243 bp upstream