rs261566898 SNP Detail

Summary

• ID
  rs261566898
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59439455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGGTGAA CTAGCCCTAC
  CTCTAAGGCA GGCAAATACA CCCATATAAG GGCTGAACTT GGGCTGCCTT AGGAAGAAAC
  CGTTAAAATA AACTTCCTAG TCTCTTGTAA CAAGTTTTCT TGAAGATTAT TTCTGTCCAA
  CAAAGAAAGA AGCCTGCTTT GGGAAGTAGT AGAGCACCAT GAAAGTGTGA ACATGTCTCT
  R
  GGTGTTTGGG CAAAACCAGT CTCCAGGAAC CCTCACAGGT CATTGCACAA ATCCACTGTT
  CAAGACATTT TTAAAACAAC CTTTATCTCT ACTTCTCATG CCCTTCTGCA AAATAAATAT
  GTATATATAC TTTAAAAAAA AACATGATGC ATGAAAAAAC AACTATCCAA GACTTGGACA
  TGGGAAGGAA AATTACTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141037	CHEV_4_59452327	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261566898					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59439455 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	662 bp distal
Rr101075	regulatory region 101075	54 bp distal
Susd1	sushi domain containing 1	822 bp upstream
Tssr37430	transcription start site region 37430	1280 bp downstream
Tssr37431	transcription start site region 37431	683 bp upstream
Tssr41933	transcription start site region 41933	1150 bp upstream
Tssr41934	transcription start site region 41934	1029 bp upstream
Tssr41935	transcription start site region 41935	776 bp upstream