rs261571181 SNP Detail

Summary

• ID
  rs261571181
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126292995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAATCGA GAAAATTCTT
  CCATAAGATC AGGCTCTACA CACACACACA CACACACACA CACACACACA CACACACACA
  CACACACATG CAAGCCTGTA GAACATTTTC CTGATTAACA ACTGATGTGG GAGGGCTCAG
  CCATTGTGAG TGGTGCAGCC CCTGAGTTGG TGGCCTTGGG TCCCACCGCC TCTGCATCAG
  S
  TCTTGTTTGA GTTCCTGTCC TGACTTCCTC CAACGATGAA CGTGAAGTGG AAACATAGAG
  GAATTTTAAT CCAGCAACAT GGCTGCTCTG GTAAGGAATC ACATCCAAAG GCCCAGGTCT
  ATATGATGGG GCTGGAATGC CAACACGGCC TGGACTACAG TATGATTTGC TGGAACGCAG
  ACACGCCCTT TCATCCCTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373073458	MGP_WTSI_7_133837337	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261571181					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373073458	MGP_WTSI_7_133837337	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126292995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19704	CpG island 19704	1035 bp distal
Cpgi19705	CpG island 19705	1516 bp proximal
Rr368435	regulatory region 368435	1833 bp upstream
Rr400629	regulatory region 400629	141 bp downstream
Rr400630	regulatory region 400630	1410 bp upstream
Rr655564	regulatory region 655564	63 bp distal
Rr655565	regulatory region 655565	372 bp distal
Rr655566	regulatory region 655566	196 bp distal
Rr655567	regulatory region 655567	1103 bp proximal
Rr655568	regulatory region 655568	1123 bp proximal
Rr655569	regulatory region 655569	1431 bp proximal
Rr655570	regulatory region 655570	1935 bp proximal
Rr655571	regulatory region 655571	1951 bp proximal
Slx1b	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	within coordinates
Tssr69055	transcription start site region 69055	1532 bp upstream
Tssr74794	transcription start site region 74794	1891 bp downstream
Tssr74795	transcription start site region 74795	1908 bp downstream