rs261571673 SNP Detail

Summary

• ID
  rs261571673
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184543853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT GCAGCTATTC GTAGACACCC
  S
  CCCCCCGCAC CCCCCACCCA CACGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
ss639418829	FVB_NJ_1_186635535	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	G	G	C	G	G	G	G	G	G	G	C	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RF/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ
rs261571673					SNP	G	G	G	C	G	G	C	G	G	G	G	G	G	G	C	G	C	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss639418829	FVB_NJ_1_186635535	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184543853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1161	CpG island 1161	319 bp distal
Gm70890	predicted gene, 70890	268 bp upstream
Mtarc1	mitochondrial amidoxime reducing component 1	459 bp upstream
Mtarc2	mitochondrial amidoxime reducing component 2	1412 bp downstream
Rr425290	regulatory region 425290	within coordinates
Rr425291	regulatory region 425291	279 bp proximal
Rr425292	regulatory region 425292	692 bp proximal
Rr425293	regulatory region 425293	840 bp proximal
Tssr15650	transcription start site region 15650	665 bp upstream
Tssr15651	transcription start site region 15651	493 bp upstream
Tssr15652	transcription start site region 15652	453 bp upstream
Tssr15653	transcription start site region 15653	392 bp upstream
Tssr15654	transcription start site region 15654	353 bp upstream
Tssr15655	transcription start site region 15655	342 bp upstream