rs261572540 SNP Detail

Summary

• ID
  rs261572540
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53214124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGGTTG GAAGACGGGC
  AGATAAGAGG GGATGGGGAG ATGAGCAGGC CTGGGATGCA TGACGTGAAA TCCACAAAGA
  ATCAATTAGA AGTTTTAAAA AGATTTTATC TGGGAAAACA AATGCCTGAA CGCAATAAGT
  CAGGTATGGG CTGGAGGAGG ACTAATGAAG AGTGATTTGG TTTTGTAGAT ATAAAAAAAA
  W
  TTTTTTCAAG ACAGGGTTTC TCTGTGTCGC CTTGGCTGTC CTGGAACTCA CTCTGGAGAC
  CAGGCTGGCC TCATATTTGC TATATAGCCC AGGTTGGCCT TAACCTCCTT GTCCTCCTTT
  CTCTACATCC TGAATCCTGA TTTTAGAAAC TTGTGTCATA ACTTGGGAAT TAGACTAGCC
  TGAGCTAAGT TTCTGGCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672275	CHEV_11_53136799	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261572540					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53214124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	1294 bp proximal
Gm74485	predicted gene, 74485	within coordinates
Tssr101382	transcription start site region 101382	1377 bp upstream
Tssr107917	transcription start site region 107917	1293 bp downstream
Zcchc10	zinc finger, CCHC domain containing 10	1392 bp upstream