rs261574363 SNP Detail

Summary

• ID
  rs261574363
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111505689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTTTCGG CAGTTACAAC
  GCTGTCGCTC GGCCGGGGCA ACCCATGACT CGCCGGTGGC CTTTGATGTG ACAATCTCCC
  GGCGGCTGAG GGAGCAGGGT TTGTGTTCCG TGTTGTCCTC CTCGTTTCGA GCAGTTTCCC
  TGCCAGTCAC AACCCGTGTC AAAATGGTGG CCTCCTGGGT TCCTGGAGTT GTGCTTTGTT
  W
  CATGGGGATG TCAGCTGTTT TCTCACAAGG ACTCGGGCTG TTAGAGCTCG GAGTGTTAGT
  TGTGTGAGGG ACTCGGGGAC GGGAAGTTGT CCCGGGGAGG AGTGATGCTA AACCTGTAGG
  GTTGTTGTGT GTTTTCTCCT TTTCTCTTTC AGAGCTGTTG CGCAGCCATT GGTACCTGTA
  TTGGGGAAAC ATAGCATACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387360289	MGP_WTSI_12_112777466	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261574363					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387360289	MGP_WTSI_12_112777466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111505689 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	within coordinates
Gm56546	predicted gene, 56546	1020 bp upstream
Gm58608	predicted gene, 58608	within coordinates
Gm60631	predicted gene, 60631	621 bp upstream
Rr403512	regulatory region 403512	1127 bp downstream
Snora28	small nucleolar RNA, H/ACA box 28	1691 bp upstream
Tssr115320	transcription start site region 115320	1012 bp downstream
Tssr115321	transcription start site region 115321	977 bp downstream
Tssr115322	transcription start site region 115322	880 bp downstream
Tssr115323	transcription start site region 115323	773 bp downstream
Tssr115324	transcription start site region 115324	451 bp downstream
Tssr115325	transcription start site region 115325	381 bp downstream
Tssr115326	transcription start site region 115326	179 bp upstream
Tssr115327	transcription start site region 115327	958 bp upstream
Tssr117828	transcription start site region 117828	1299 bp upstream
Tssr117829	transcription start site region 117829	649 bp upstream