rs261576676 SNP Detail

Summary

• ID
  rs261576676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25103088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCACCAT GATGAGACCC
  GTAGCTAGGG TAAGACCCAC AAGTGGTCCA GGAAGAACGC CCAGTAAGAA TGTCTTCTCT
  ATCCACAAAG TTACTTACCT GACACTGGGA CCTGTGGACA AGAGACCTAC TTTCTCAAAG
  TCCCTGACTA CCTGACCTGT CTTGTCCTCC CTCAGACCTT GAAAGATGCC CACCCATCTT
  Y
  TAAGACTCAC AGCGCAGTGT GGGCAGGTGA AGCCGCTCAT GTTCTCTATG ACCCCTATCA
  CCTGCAGCCC AGTCTTCTTA CAGAAGGTCA GCTCCCGCCT CACATCCCCA ATAGACACCG
  CCTGTGGATC AGAGGAGGGG CCAGTCAGCC ACAGATGAGG CAAGAATCAA GCAGAGAACA
  TGGCCCACTA CAGTCCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397865521	MGP_WTSI_17_25021059	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261576676					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397865521	MGP_WTSI_17_25021059	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25103088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	1691 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr329822	regulatory region 329822	1888 bp distal
Rr339336	regulatory region 339336	912 bp proximal
Tssr143106	transcription start site region 143106	1848 bp upstream
Tssr143107	transcription start site region 143107	1861 bp upstream
Tssr143108	transcription start site region 143108	1888 bp upstream
Tssr143109	transcription start site region 143109	1906 bp upstream
Tssr146788	transcription start site region 146788	1745 bp downstream
Tssr146789	transcription start site region 146789	1758 bp downstream
Tssr146790	transcription start site region 146790	1786 bp downstream
Tssr146791	transcription start site region 146791	1822 bp downstream