rs261578611 SNP Detail

Summary

• ID
  rs261578611
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173419617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAGACA AGAGGCTGCC
  CAGAAGGTCT TGTGGTTTTG AGAGTTGAGG TTCTGAGCAG CCTGGACTTG CTCAAGGTTG
  GCAGACCACA GCCTGCGACA GACACAATGC TTGTGAATGA GGTTCACCTA TATATTTGGG
  GTTAATAAGA CACCCACCCA TGTGCTTGGA GTTAGGAGCC CTTGAGTGGC CAGCGCTCCA
  M
  GGGGCCGTTC TAGATGGGGC TCGAGTGGTT GGGTTTGACT TGGTCACCTT GGATTCTCTG
  GCAGTTACGA GTGTCATGGG GACCCAGGGC AGGAGTGGGC CGGGGGGGGG GGCCATTGAG
  TGGGAGGAGC TCATGGGGTG CGGGAAGGGG TCGGGCAGGG GCCACCTCGG TCCAGGAAAT
  GCAGCCGCTG CAGGTTGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320625289	CHEV_2_173403325	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261578611					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173419617 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	within coordinates
Cpgi12846	CpG island 12846	within coordinates
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	115 bp upstream
Rr571985	regulatory region 571985	within coordinates
Rr571986	regulatory region 571986	364 bp proximal
Tssr27995	transcription start site region 27995	347 bp downstream
Tssr27996	transcription start site region 27996	364 bp downstream
Tssr27997	transcription start site region 27997	379 bp downstream
Tssr27998	transcription start site region 27998	391 bp downstream
Tssr27999	transcription start site region 27999	476 bp downstream