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rs261584558 SNP Detail
Summary
  • ID
    rs261584558
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:8061631 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGGAATCTA TTCAAGTTTT
TCCTCCCAGA TTTCAAGGGA TTCAACACTA TTGACAATAT TTATATTCCA GCCATGGGCA
ACTTTACCTA TGACTTTTCT TTTAAATCAA GTGTCATCAC ACTGAATACC AATGCTGGAC
TTTATAACCA ATCAGATATC GTTGCCCATT TCCTTTCTTC CTCTTCATTT GTCACTGACG
Y
CCTGCAGTAC AAATTAGAGG GAACATCACG TCTGATGCGA AAAAGGGGAT TGAAACTAGC
CACAGCTGTC TCTCTAACTA ACAAATTTGT AAAGGGCAGT CATGACAGCA CCATTAGTTT
AACCAAGAAA AACATGGAAG CATCAGTGAG AACAACTGCC AACCTCCATG CTCCCATATT
CTCAATGAAC TTCAAGCAGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385064720 MGP_WTSI_12_8018437 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261584558 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385064720 MGP_WTSI_12_8018437 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:8061631 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apob apolipoprotein B within coordinates
Tssr112661 transcription start site region 112661 1811 bp downstream
Tssr112662 transcription start site region 112662 1570 bp downstream
Tssr112663 transcription start site region 112663 1329 bp downstream
Tssr112664 transcription start site region 112664 1305 bp downstream
Tssr112665 transcription start site region 112665 1150 bp downstream
Tssr112666 transcription start site region 112666 1130 bp downstream
Tssr112667 transcription start site region 112667 1081 bp downstream
Tssr112668 transcription start site region 112668 945 bp downstream
Tssr112669 transcription start site region 112669 858 bp downstream
Tssr112670 transcription start site region 112670 802 bp downstream
Tssr112671 transcription start site region 112671 699 bp downstream
Tssr112672 transcription start site region 112672 117 bp downstream
Tssr112673 transcription start site region 112673 49 bp downstream
Tssr112674 transcription start site region 112674 15 bp upstream
Tssr112675 transcription start site region 112675 42 bp upstream
Tssr112676 transcription start site region 112676 145 bp upstream
Tssr112677 transcription start site region 112677 295 bp upstream
Tssr112678 transcription start site region 112678 419 bp upstream
Tssr112679 transcription start site region 112679 444 bp upstream
Tssr112680 transcription start site region 112680 463 bp upstream
Tssr112681 transcription start site region 112681 510 bp upstream
Tssr112682 transcription start site region 112682 523 bp upstream
Tssr112683 transcription start site region 112683 560 bp upstream
Tssr112684 transcription start site region 112684 604 bp upstream
Tssr112685 transcription start site region 112685 652 bp upstream
Tssr112686 transcription start site region 112686 700 bp upstream
Tssr112687 transcription start site region 112687 780 bp upstream
Tssr112688 transcription start site region 112688 881 bp upstream
Tssr112689 transcription start site region 112689 923 bp upstream
Tssr112690 transcription start site region 112690 948 bp upstream
Tssr112691 transcription start site region 112691 999 bp upstream
Tssr112692 transcription start site region 112692 1035 bp upstream
Tssr112693 transcription start site region 112693 1054 bp upstream
Tssr112694 transcription start site region 112694 1192 bp upstream
Tssr112695 transcription start site region 112695 1411 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory