rs261613245 SNP Detail

Summary

• ID
  rs261613245
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103060977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCGAGCC CCGGTTATGA
  AGGCCTACCC CTTCTCCACT CTCCTACCCT AAATAAGAAG AGTCCGAGGC TATAGATTTT
  TGGATATGAA CAGAGAGGCT CGTTTCTGCC CTAATTATCT GTGTGGCCTT GGACAAGACC
  CCTTGCTACA GCTACGGAAA GGCCCCTTGT TACCGTTACA GAAACAAGGA CATCCATACC
  Y
  ACCTTTGCTG GTCACTATCA CAGAAATCTT TCTGTAACTA TCAGATAGCC AAGATTGTCA
  TTCTTCAGCC AGCCTAGGTC CCTCATGGTG ACAGTGTCAA GATTTTCCAC CCATCTGAGG
  TGCCTGTTCC TCCCCCAGCC TAGCAGCTGC CTTTAACCCT TCTTAGTGCC CTACTTCTCC
  TTGGCACCAC CACAGTGATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384517800	MGP_WTSI_11_103031465	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261613245					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384517800	MGP_WTSI_11_103031465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103060977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3957	CpG island 3957	396 bp proximal
Fmnl1	formin-like 1	956 bp upstream
Gm51919	predicted gene, 51919	within coordinates
Rr403012	regulatory region 403012	1057 bp downstream
Rr457536	regulatory region 457536	1786 bp distal
Rr457537	regulatory region 457537	903 bp distal
Rr457538	regulatory region 457538	2 bp proximal
Rr457539	regulatory region 457539	112 bp proximal
Rr457540	regulatory region 457540	766 bp proximal
Rr457541	regulatory region 457541	1770 bp proximal
Tssr105316	transcription start site region 105316	265 bp upstream
Tssr105317	transcription start site region 105317	342 bp upstream
Tssr105318	transcription start site region 105318	576 bp upstream
Tssr105319	transcription start site region 105319	606 bp upstream
Tssr105320	transcription start site region 105320	695 bp upstream
Tssr105321	transcription start site region 105321	812 bp upstream
Tssr105322	transcription start site region 105322	841 bp upstream
Tssr105323	transcription start site region 105323	930 bp upstream