rs261623230 SNP Detail

Summary

• ID
  rs261623230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149984002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAT CATGGCATTG ATATCTCTGA
  R
  TCATGATCCT TAAACCATTA TCTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045556	CHEV_1_151955381	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261623230					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149984002 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	24 bp downstream
Tssr9287	transcription start site region 9287	1766 bp downstream
Tssr9288	transcription start site region 9288	1652 bp downstream
Tssr9289	transcription start site region 9289	1635 bp downstream
Tssr9290	transcription start site region 9290	1481 bp downstream
Tssr9291	transcription start site region 9291	1433 bp downstream
Tssr9292	transcription start site region 9292	1305 bp downstream
Tssr9293	transcription start site region 9293	1289 bp downstream
Tssr9294	transcription start site region 9294	1266 bp downstream
Tssr9295	transcription start site region 9295	1239 bp downstream
Tssr9296	transcription start site region 9296	1227 bp downstream
Tssr9297	transcription start site region 9297	1214 bp downstream
Tssr9298	transcription start site region 9298	1188 bp downstream
Tssr9299	transcription start site region 9299	1170 bp downstream
Tssr9300	transcription start site region 9300	1151 bp downstream
Tssr9301	transcription start site region 9301	1018 bp downstream
Tssr9302	transcription start site region 9302	994 bp downstream
Tssr9303	transcription start site region 9303	918 bp downstream
Tssr9304	transcription start site region 9304	898 bp downstream
Tssr9305	transcription start site region 9305	889 bp downstream
Tssr9306	transcription start site region 9306	877 bp downstream
Tssr9307	transcription start site region 9307	851 bp downstream
Tssr9308	transcription start site region 9308	834 bp downstream
Tssr9309	transcription start site region 9309	812 bp downstream
Tssr9310	transcription start site region 9310	787 bp downstream
Tssr9311	transcription start site region 9311	764 bp downstream
Tssr9312	transcription start site region 9312	746 bp downstream
Tssr9313	transcription start site region 9313	738 bp downstream
Tssr9314	transcription start site region 9314	719 bp downstream
Tssr9315	transcription start site region 9315	627 bp downstream
Tssr9316	transcription start site region 9316	442 bp downstream
Tssr9317	transcription start site region 9317	156 bp downstream
Tssr9318	transcription start site region 9318	553 bp upstream