rs261625690 SNP Detail

Summary

• ID
  rs261625690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124606614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGTAAG GTGACATGTG
  AGTGCTGAGA ACCAGATATT CTTAGCCACT AAGCCATTAC ACCAGTCCCT TCCTTCTTTA
  TGGAGTATGA TGCTCTCATG GGTCCGTATA GCATTCCCTC ACTGCTGAAC AGTATTGTCT
  GACAACATGG TTATCCATTC ACCCATGCAT TGGGTGTGTA TGTATGTAAA AGTGGATAGC
  R
  TGAGCAGCGT GGGGTGAGGG CGGGGCTGTT CATCCCTTGG ATCTGGAGAT ACAAGTGGCT
  GTGAGCCACC GACTTGCATG CTGGGAACTG GATTCAGATC CTCTGGAAGA GCAGCAAACG
  CTCCTCACTG CTGAGCCAGC TCTCCAGTCC CAACTAATGG GCCCTTGGGT TATATAGAGA
  TTTTGTGAAT TGTGAATAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321294513	CHEV_4_124390065	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261625690					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124606614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14778	CpG island 14778	1709 bp proximal
Rr367691	regulatory region 367691	1734 bp upstream
Rr599338	regulatory region 599338	1462 bp distal
Rr599339	regulatory region 599339	1722 bp distal
Rr599340	regulatory region 599340	within coordinates
Rr599341	regulatory region 599341	1360 bp proximal
Rr599342	regulatory region 599342	1501 bp proximal
Rr599343	regulatory region 599343	1635 bp proximal
Sf3a3	splicing factor 3a, subunit 3	Intron
Tssr38902	transcription start site region 38902	1988 bp upstream