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rs261626570 SNP Detail
Summary
  • ID
    rs261626570
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:76133994 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTGTGCCAC CTTCTGTCCA
CTCACTGTTG CATGAGCCCT GTCTGCCAGC CCCATCCCAG GGTCAGGGAC CAACACCAGG
TCTCAGGGGA GAAGGATCAT ACCAAGAGGT GAGGGTGCAC GTCTTCCCTT CTGTCCCGGC
TCCCCTGGCA TAGAGTACCC GTGTCCCCTC CCCACCCTGC CTTCTGAGGG GCACGCAGGG
Y
GGGGTCTCAT TCTTGCGCTG GGCCCCAAGA GCAGAGAGGA TGTCATGTTT CAAGGGAGGA
GGCTCTCTCG TGCTGCCATT GTTAAAATGC CAATAAAAGG GTACCTTCTG CTTTCTGCTT
CTCCTTGTCT CTCTTCACTG CCACTTCCTC CAGGAGGCAT GGAGGGGCTT CAGCACCCCC
TGCCCTGGCT GATGGTTAGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394611528 MGP_WTSI_15_76080224 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261626570 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss394611528 MGP_WTSI_15_76080224 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:76133994 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Grina glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding) within coordinates
Mir6953 microRNA 6953 1536 bp downstream
Tssr131729 transcription start site region 131729 1958 bp downstream
Tssr131730 transcription start site region 131730 1938 bp downstream
Tssr131731 transcription start site region 131731 1871 bp downstream
Tssr131732 transcription start site region 131732 1841 bp downstream
Tssr131733 transcription start site region 131733 1805 bp downstream
Tssr131734 transcription start site region 131734 1776 bp downstream
Tssr131735 transcription start site region 131735 1722 bp downstream
Tssr131736 transcription start site region 131736 1652 bp downstream
Tssr131737 transcription start site region 131737 1496 bp downstream
Tssr131738 transcription start site region 131738 1322 bp downstream
Tssr131739 transcription start site region 131739 1296 bp downstream
Tssr131740 transcription start site region 131740 1231 bp downstream
Tssr131741 transcription start site region 131741 1170 bp downstream
Tssr131742 transcription start site region 131742 982 bp downstream
Tssr131743 transcription start site region 131743 952 bp downstream
Tssr131744 transcription start site region 131744 933 bp downstream
Tssr131745 transcription start site region 131745 806 bp downstream
Tssr131746 transcription start site region 131746 752 bp downstream
Tssr131747 transcription start site region 131747 704 bp downstream
Tssr131748 transcription start site region 131748 528 bp downstream
Tssr131749 transcription start site region 131749 452 bp downstream
Tssr131750 transcription start site region 131750 305 bp downstream
Tssr131751 transcription start site region 131751 234 bp downstream
Tssr134961 transcription start site region 134961 1746 bp upstream
Tssr134962 transcription start site region 134962 1621 bp upstream
Tssr134963 transcription start site region 134963 444 bp upstream
Tssr134964 transcription start site region 134964 413 bp upstream
Tssr134965 transcription start site region 134965 388 bp upstream
Tssr134966 transcription start site region 134966 255 bp upstream
Tssr134967 transcription start site region 134967 107 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory