rs261645564 SNP Detail

Summary

• ID
  rs261645564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37561847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGGGATCAC AGTTATGATT CACAGGTGCC AAAATATCCT
  AGTGCTGCAA AGTACAGGAT GAATTTCTTA GAAAATGAAG TATTATAAGT GCCATGCAAT
  Y
  GTGGGCCTTA TGGAGGCTGT TGGAACAGAC AGCTGCGAAA GGTTGAAGGA GGTGCAGCGA
  GCCTAGGAGA GGCCGGCTCC CGAGGCGAGG GTGTACTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SWR/J
ss374303760	MGP_WTSI_8_38157747	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	T	T	T	T	T	T	T	T	C	C	T	C	T	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	NOD/ShiLtJ	PWK/PhJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SWR/J
rs261645564					SNP	C	T	C	T	T	T	T	T	T	T	T	C	C	T	C	T	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374303760	MGP_WTSI_8_38157747	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37561847 () rs orientation: forward

Symbol	Name	Function Class
Ccnq-ps4	cyclin Q, pseudogene 4	10 bp upstream
Gm18267	predicted gene, 18267	225 bp downstream
Gm64931	predicted gene, 64931	275 bp upstream