rs261645999 SNP Detail

Summary

• ID
  rs261645999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114781642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAGAACA AGAGACAAGT
  CAACACACGG TGGGGGCTGG TGGCTGTCCA GGACGGGTGC CCAGAGGATT TTTGGATGGT
  TTAGAATAGA AAACAGGAGG TCAGGGCAGG TGGTACCAGT ATGAGTGGAC AGTGGTTGTG
  TTGAGAGGCC CTGACAGGCA CGTGCTGGTG TGGATGTGTG TGAAAAAATT TAATCTGTCT
  R
  TCTTTCTTTC CTTCTCTTCC TTCCTTCCAT CTTTCCCTCT TTCTTTCTTT TCTTCTTGGG
  TCCCCCCCCC CCTTTTTGGG TTTTCAAGGC AGGGTTTCTC TGTGTAGCCT TGTTTGTTCT
  TTCTTTCTCT CTCTCTCTTT CTTTCTTTCT TTCTTTCTTT CTTCCTCCCT TCCTTTCTTT
  CTTTCTTTCT TTTTTGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss384815801	MGP_WTSI_11_114752130	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	G	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs261645999					SNP	A	A	A	G	A	A	A	A	A	A	G	G	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	G	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384815801	MGP_WTSI_11_114752130	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114781642 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	445 bp distal
Rr459730	regulatory region 459730	470 bp distal
Tssr105810	transcription start site region 105810	613 bp downstream
Tssr105811	transcription start site region 105811	590 bp downstream
Tssr105812	transcription start site region 105812	446 bp downstream
Tssr105813	transcription start site region 105813	430 bp downstream
Tssr105814	transcription start site region 105814	196 bp upstream
Tssr111666	transcription start site region 111666	590 bp upstream