rs261670942 SNP Detail

Summary

• ID
  rs261670942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:33786831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGGACAC GGGACACGAG
  GACAGTGCTG GGCCCGGGGC GCGCGGGGAC CTTAAGGTGC TGAGACGCCG GCTGGCCCTA
  GAGGGTGTTC CGCGCGCTGT GCCGATGCAC CCGGCTCTCG ACGTGCGGCT GCGCGGCGCC
  GGCCGACGTA CGGAGACTCC GGGATCGCAG CGCAAGGACA CGGCGTTGCG GTGGCTGGAG
  Y
  TCTTAGCGAT GAGCAGGCGA ACGACGGCGC AGAGCACTCT CCGCGAGGCG AGTGAGCACC
  GAGCTCCGTA GCTGGGGCAG GGCGCCGGCC GCGCAGGCCG CGCTCCGCGC ATGGGGACGG
  TGAGCCTCAG TCACCGCGGA ACAAAACCGC AGCCGACGCC CCGCCCCCTC CGGACGCCCT
  CATTGGTCGC CGCGCCGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss364484790	MGP_WTSI_5_33972136	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs261670942					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364484790	MGP_WTSI_5_33972136	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:33786831 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15737	CpG island 15737			within coordinates
Fam53a	family with sequence similarity 53, member A			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm9903	predicted gene 9903			438 bp upstream
Rr399034	regulatory region 399034			151 bp upstream
Rr609574	regulatory region 609574			1213 bp distal
Rr609575	regulatory region 609575			586 bp distal
Rr609576	regulatory region 609576			85 bp distal
Rr609577	regulatory region 609577			125 bp proximal
Rr609578	regulatory region 609578			449 bp proximal
Tssr45824	transcription start site region 45824			428 bp upstream
Tssr45825	transcription start site region 45825			462 bp upstream
Tssr50608	transcription start site region 50608			48 bp downstream
Tssr50609	transcription start site region 50609			90 bp downstream