rs261671725 SNP Detail

Summary

• ID
  rs261671725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57276715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAATTTT CTGCTGTGGG
  TGTAAAAAAT TACTATTATT ACTGTTACCC CAGCATCCAG AAGACTACTT GGCATGTAGT
  ATGCCCTCAA TAAATAGATA AGTTAGAGTG ACTTCAATAG CTCAACACTA AATTACCAGA
  GCATCAGTGG CTAGGGTGGG GTGCAGGAGT TCTAGATTAG ATAGGGCAGC ATAGGGACAC
  Y
  ACTTCTCTTT CTTTAAAAGG AGAAAAATAT TCGAATATTA TCAGCTATAT CATCTAATAG
  AATTCCACAT TACTCCTATA CTTCGCTTTA AAAATATCCC TGGCGTTCAG CCCTTTCTTT
  TAAGTTCTGC GATTGAACAT TCTGAGTACA CCCTTTCTAG TCCTGAAGTC AAAATGTCAC
  CAGCCTTAAA GCTTTTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324050322	CHEV_12_58330916	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261671725					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57276715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	120 bp proximal
Mipol1	mirror-image polydactyly 1	498 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	483 bp upstream
Rr265473	regulatory region 265473	within coordinates
Rr403305	regulatory region 403305	448 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113519	transcription start site region 113519	477 bp upstream
Tssr113520	transcription start site region 113520	536 bp upstream
Tssr113521	transcription start site region 113521	585 bp upstream