rs261687097 SNP Detail

Summary

• ID
  rs261687097
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52247842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTTATT TGCTGTCCTC
  AAAACTTGCA TCCCTTCATC TGCCAACTTG TATGATAAAT ACAGACTTCC TCCCCCAAAT
  GATGTTTTAA ACACCTAGTC CAGAACCGCC GCCGCCACCA CACACACACA CACACACACA
  CACACACACA CACAATGTGG GAGGCCATCA TAGTATACCC CTCTTCCACT CGCGTTGGGC
  W
  GTGCCCCTGG ATAAACAAAT GTGGAGGGCT AGCCATACTC CTGTTATCCA AATGGTACTA
  GCTCCTCTCA GACCAGGGCC AGCCAGCCAG AAGCCCTCCA GGTTCCTCCT CCTAGCTTCT
  GCCGGCACCC AGTCTTCTGG TCTTCCTCCT CCCCCTCCCC CTTCCTGGAT TCCTGATCCA
  TTCATTTCCA TTCATTACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391102061	MGP_WTSI_14_52630060	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261687097					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391102061	MGP_WTSI_14_52630060	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52247842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6435	CpG island 6435	723 bp distal
D14Mit183	DNA segment, Chr 14, Massachusetts Institute of Technology 183	16 bp distal
Rr369820	regulatory region 369820	1538 bp downstream
Rr369821	regulatory region 369821	1254 bp downstream
Tssr128467	transcription start site region 128467	1673 bp upstream
Tssr128468	transcription start site region 128468	1492 bp upstream
Tssr128469	transcription start site region 128469	1399 bp upstream
Tssr128470	transcription start site region 128470	1181 bp upstream
Tssr128471	transcription start site region 128471	750 bp upstream
Tssr128472	transcription start site region 128472	722 bp upstream
Tssr128473	transcription start site region 128473	463 bp downstream
Tssr128474	transcription start site region 128474	483 bp downstream
Zfp219	zinc finger protein 219	within coordinates