rs261689624 SNP Detail

Summary

• ID
  rs261689624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24848984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGTGACTT TCCCATCTCA GGATCTGAGT GCTGGGATTA
  CATGTGCTCA CCATTACACT ACACTCAGTT AACAGATTCA TTTTAAGATA TGCATTCTAA
  R
  CCAGGCGGTG GTGGTGCATG TCTTTAATTC CAGCACTCGG GAGGCAGAGG CAGGCAGATT
  TCTGAGTTCG AGGCCAGCCT GGTCTACAAA GTGAGTTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321496124	CHEV_5_24149804	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261689624					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24848984 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	1461 bp upstream
Tssr45439	transcription start site region 45439	1479 bp upstream
Tssr45440	transcription start site region 45440	1496 bp upstream
Tssr45441	transcription start site region 45441	1508 bp upstream
Tssr45442	transcription start site region 45442	1515 bp upstream