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rs261700922 SNP Detail
Summary
  • ID
    rs261700922
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129871 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCCCCCCCA CACACACACC
TTCTCCTTAT CTCACCCTCT CCCTGCATCT CCTCTTTCTC CAACTTCCTG TCCTGTCTGC
CTCTCTTCTT CATCCTACTC ACCCTCCTCC ACTTCCAACT GTTTTCTCTT CAGCCCATCT
CCTTTCTAGC TCCTTCTCTA TTCCTCATCT TCCTTTCTCT GTACCCTCTT CCCCCACTTC
Y
TCATCCTCTC CTCTCTTCCT TCTTGCCCTC ATCTTTTCCT GCAGCTCCAG TTCTCCCATC
ATGTTTCTCT TGCTCTTCCT TCTCCATCCA TCACTTTCCT CTTCCTTCCA ATTCTCATTT
CCTTCCTCCT TTTCCTTAGT CCTGTCTACC ACTACCTCTT CCTCCTCCTC TCCCACTGTC
TTTTCCTGTG CTCACTCCCT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156139 MGP_WTSI_7_51735817 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs261700922 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156139 MGP_WTSI_7_51735817 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129871 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2227 transcription start site region 2227 1427 bp downstream
Tssr2228 transcription start site region 2228 364 bp downstream
Tssr2229 transcription start site region 2229 89 bp downstream
Tssr2230 transcription start site region 2230 86 bp upstream
Tssr2231 transcription start site region 2231 219 bp upstream
Tssr2232 transcription start site region 2232 394 bp upstream
Tssr2233 transcription start site region 2233 427 bp upstream
Tssr2234 transcription start site region 2234 586 bp upstream
Tssr2235 transcription start site region 2235 1220 bp upstream
Tssr66278 transcription start site region 66278 1965 bp downstream
Tssr66279 transcription start site region 66279 1920 bp downstream
Tssr66280 transcription start site region 66280 1898 bp downstream
Tssr66281 transcription start site region 66281 1858 bp downstream
Tssr66282 transcription start site region 66282 1841 bp downstream
Tssr66283 transcription start site region 66283 1827 bp downstream
Tssr66284 transcription start site region 66284 1815 bp downstream
Tssr66285 transcription start site region 66285 1801 bp downstream
Tssr66286 transcription start site region 66286 1762 bp downstream
Tssr66287 transcription start site region 66287 1726 bp downstream
Tssr66288 transcription start site region 66288 1701 bp downstream
Tssr66289 transcription start site region 66289 1619 bp downstream
Tssr66290 transcription start site region 66290 1581 bp downstream
Tssr66291 transcription start site region 66291 1555 bp downstream
Tssr66292 transcription start site region 66292 1523 bp downstream
Tssr66293 transcription start site region 66293 1501 bp downstream
Tssr66294 transcription start site region 66294 1477 bp downstream
Tssr66295 transcription start site region 66295 1212 bp downstream
Tssr66296 transcription start site region 66296 1041 bp downstream
Tssr66297 transcription start site region 66297 1017 bp downstream
Tssr66298 transcription start site region 66298 962 bp downstream
Tssr66299 transcription start site region 66299 942 bp downstream
Tssr66300 transcription start site region 66300 919 bp downstream
Tssr66301 transcription start site region 66301 903 bp downstream
Tssr66302 transcription start site region 66302 862 bp downstream
Tssr66303 transcription start site region 66303 853 bp downstream
Tssr66304 transcription start site region 66304 848 bp downstream
Tssr66305 transcription start site region 66305 809 bp downstream
Tssr66306 transcription start site region 66306 755 bp downstream
Tssr66307 transcription start site region 66307 706 bp downstream
Tssr66308 transcription start site region 66308 689 bp downstream
Tssr66309 transcription start site region 66309 639 bp downstream
Tssr66310 transcription start site region 66310 570 bp downstream
Tssr66311 transcription start site region 66311 547 bp downstream
Tssr66312 transcription start site region 66312 528 bp downstream
Tssr66313 transcription start site region 66313 518 bp downstream
Tssr66314 transcription start site region 66314 500 bp downstream
Tssr66315 transcription start site region 66315 493 bp downstream
Tssr66316 transcription start site region 66316 428 bp downstream
Tssr66317 transcription start site region 66317 412 bp downstream
Tssr66318 transcription start site region 66318 371 bp downstream
Tssr66319 transcription start site region 66319 343 bp downstream
Tssr66320 transcription start site region 66320 319 bp downstream
Tssr66321 transcription start site region 66321 295 bp downstream
Tssr66322 transcription start site region 66322 279 bp downstream
Tssr66323 transcription start site region 66323 241 bp downstream
Tssr66324 transcription start site region 66324 188 bp downstream
Tssr66325 transcription start site region 66325 147 bp downstream
Tssr66326 transcription start site region 66326 137 bp downstream
Tssr66327 transcription start site region 66327 117 bp downstream
Tssr66328 transcription start site region 66328 99 bp downstream
Tssr66329 transcription start site region 66329 60 bp downstream
Tssr66330 transcription start site region 66330 47 bp downstream
Tssr66331 transcription start site region 66331 33 bp downstream
Tssr66332 transcription start site region 66332 within coordinates
Tssr66333 transcription start site region 66333 25 bp upstream
Tssr66334 transcription start site region 66334 37 bp upstream
Tssr66335 transcription start site region 66335 46 bp upstream
Tssr66336 transcription start site region 66336 55 bp upstream
Tssr66337 transcription start site region 66337 73 bp upstream
Tssr66338 transcription start site region 66338 129 bp upstream
Tssr66339 transcription start site region 66339 180 bp upstream
Tssr66340 transcription start site region 66340 225 bp upstream
Tssr66341 transcription start site region 66341 270 bp upstream
Tssr66342 transcription start site region 66342 332 bp upstream
Tssr66343 transcription start site region 66343 364 bp upstream
Tssr66344 transcription start site region 66344 509 bp upstream
Tssr66345 transcription start site region 66345 542 bp upstream
Tssr66346 transcription start site region 66346 598 bp upstream
Tssr66347 transcription start site region 66347 636 bp upstream
Tssr66348 transcription start site region 66348 677 bp upstream
Tssr66349 transcription start site region 66349 701 bp upstream
Tssr66350 transcription start site region 66350 729 bp upstream
Tssr66351 transcription start site region 66351 737 bp upstream
Tssr66352 transcription start site region 66352 773 bp upstream
Tssr66353 transcription start site region 66353 847 bp upstream
Tssr66354 transcription start site region 66354 861 bp upstream
Tssr66355 transcription start site region 66355 888 bp upstream
Tssr66356 transcription start site region 66356 905 bp upstream
Tssr66357 transcription start site region 66357 919 bp upstream
Tssr66358 transcription start site region 66358 931 bp upstream
Tssr66359 transcription start site region 66359 957 bp upstream
Tssr66360 transcription start site region 66360 969 bp upstream
Tssr66361 transcription start site region 66361 995 bp upstream
Tssr66362 transcription start site region 66362 1027 bp upstream
Tssr66363 transcription start site region 66363 1044 bp upstream
Tssr66364 transcription start site region 66364 1077 bp upstream
Tssr66365 transcription start site region 66365 1097 bp upstream
Tssr66366 transcription start site region 66366 1117 bp upstream
Tssr66367 transcription start site region 66367 1145 bp upstream
Tssr66368 transcription start site region 66368 1167 bp upstream
Tssr66369 transcription start site region 66369 1201 bp upstream
Tssr66370 transcription start site region 66370 1243 bp upstream
Tssr66371 transcription start site region 66371 1668 bp upstream
Tssr66372 transcription start site region 66372 1831 bp upstream
Tssr72201 transcription start site region 72201 1496 bp upstream
Tssr72202 transcription start site region 72202 639 bp upstream
Tssr72203 transcription start site region 72203 259 bp upstream
Tssr72204 transcription start site region 72204 328 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory