rs261700930 SNP Detail

Summary

• ID
  rs261700930
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112423666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA GTTGTAACTA GTATAAAAAT
  A
  AATTTCATTT AGTTTTGTAC AGGTT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321645175	CHEV_5_112704820	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261700930					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112423666 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16258	CpG island 16258	21 bp proximal
D5Mit94	DNA segment, Chr 5, Massachusetts Institute of Technology 94	1881 bp proximal
D5Mit94.1	DNA segment, Chr 5, Massachusetts Institute of Technology 94.1	1978 bp proximal
Rr124048	regulatory region 124048	within coordinates
Rr399260	regulatory region 399260	475 bp upstream
Tpst2	protein-tyrosine sulfotransferase 2	891 bp upstream
Tssr47986	transcription start site region 47986	883 bp upstream
Tssr47987	transcription start site region 47987	894 bp upstream
Tssr47988	transcription start site region 47988	959 bp upstream
Tssr47989	transcription start site region 47989	1656 bp upstream
Tssr52564	transcription start site region 52564	556 bp downstream
Tssr52565	transcription start site region 52565	570 bp downstream