rs261709569 SNP Detail

Summary

• ID
  rs261709569
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105192289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTCCCCTG AACAGTTGCT
  CCCGGAGAGG AGTGCTAAGG GAAACTGGTT CCCATGCGGA AGGAAGTAGT TGTGTGCCTA
  GCAACCCTGG CAAAACAACT CAGCATTCTT GGTCAATGTC TTAGGTGAAT GTGATGAGTT
  CACAGAAACG GGAGCCGCAA TAGCCAGGGA GCCAACACTT TAATTGGGAA CTAGAAGAAA
  B
  TCTAGATTAT TTTCTTTTTG AAATTTAGAT ATAATTGCAT AATTTTTACC CTTTCTTTTA
  TCCCCTCCAA CTCTAACTAT GTAACCCCAC CCCTACCCCA TGGCCTCTGT TAGCTTTTTT
  TTTTTAACGG TCAGATAAAC ACATTGAGGC ACTGTGGGAT AATAAAGAAG TATATTAGAC
  TGTTGCATTT CACTGTCTGA                                            
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389805768	MGP_WTSI_13_105845861	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	C	C	G	G	G	G	C	G	G	G	G	C	C	G	G	G	C	G	G	C	G	G	G	C	G	G	G	C	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261709569					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	C	C	G	G	G	G	C	G	G	G	G	C	C	G	G	G	C	G	G	C	G	G	G	C	G	G	G	C	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389805768	MGP_WTSI_13_105845861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105192289 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6063	CpG island 6063	741 bp distal
Rgs7bp	regulator of G-protein signalling 7 binding protein	851 bp upstream
Tssr123934	transcription start site region 123934	1523 bp upstream
Tssr123935	transcription start site region 123935	1399 bp upstream
Tssr123936	transcription start site region 123936	1219 bp upstream
Tssr123937	transcription start site region 123937	1151 bp upstream
Tssr123938	transcription start site region 123938	989 bp upstream
Tssr123939	transcription start site region 123939	960 bp upstream
Tssr123940	transcription start site region 123940	934 bp upstream
Tssr123941	transcription start site region 123941	917 bp upstream
Tssr123942	transcription start site region 123942	875 bp upstream