rs261714332 SNP Detail

Summary

• ID
  rs261714332
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32903357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGATGCT TCCCTCTACC
  AGGCTGAGGC AGCACAGGAG AAATGCATGC TGGGAGCCCA GGGCCACCCC CAATGCCTGC
  CTGTACTTCC CACACTTCCC AGCATCTTGC TCACTTCCCT CACTTCCTGC CCAGCCTTTT
  GGGGACTAGA GAAGCTATAG GATGTGAAGG AAATGAGCTC AGGGAGACCA AGTGCGGGGG
  S
  GGGGGGGGGG GGCGGGGGGG GTTCCCTGGG GGGGGCGCAG GAGAGCAAGA CCACCCAAGG
  GATTTCCCAG GCCCTAACTA TGAAAGAGCC AACTACATGT GCTAGAAGGC ACTCCCACCC
  AGACCTCCCA GCCTCAGGAC AGGGAAGGAA AAGAGCCCTG AAAAGCTTGC CTGATGCTCC
  AGGTCCCACT TGTGGCTTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321505776	CHEV_5_33088661	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261714332					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32903357 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	471 bp upstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	within coordinates
Rr609421	regulatory region 609421	289 bp proximal
Rr609422	regulatory region 609422	482 bp proximal
Rr609423	regulatory region 609423	1580 bp proximal
Rr609424	regulatory region 609424	1818 bp proximal
Tssr45794	transcription start site region 45794	106 bp upstream
Tssr45795	transcription start site region 45795	508 bp upstream
Tssr50589	transcription start site region 50589	259 bp downstream
Tssr50590	transcription start site region 50590	304 bp downstream
Tssr50591	transcription start site region 50591	330 bp downstream