rs261741203 SNP Detail

Summary

• ID
  rs261741203
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCTTGC CATGGGCCAA
  CATTACAGTC TTTCTCTGGG GCATGTTGTT CCAGCACAGG GAACCAGTGC AGGTTCCTGG
  GGTCCACTGA CTGACGGGAA ACCTTACCTC CAGGGCTCAG GGGCTCACGT CTATAATTCT
  AGCACTCACA AGGTGGGGGC GGGAGATTGC ATGAATTTGA GGCCAGCCAA AGTTATGTAA
  Y
  GAGTTCTAAG CAAGAGACGC TGTCTCAAAA ATGCATGCCT TTAATCCTAG CGCTGGGGAA
  GCAGAGGTTG AGCTCTGTGA GCTTGAAACC AGCCTGATCT ACAAAGTGAG TTCCAGTACA
  GCCAGGACAC AGAAAAACCC TGTCTCCACA CACACACACA CACACACACA CACACACACA
  TCCACTACCA CCACCACCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401436776	MGP_WTSI_18_82755738	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261741203					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401436776	MGP_WTSI_18_82755738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604471 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	114 bp proximal
Gm58829	predicted gene, 58829	708 bp upstream
Mbp	myelin basic protein	709 bp downstream
Tssr152156	transcription start site region 152156	1969 bp downstream
Tssr152157	transcription start site region 152157	1891 bp downstream
Tssr152158	transcription start site region 152158	1854 bp downstream
Tssr152159	transcription start site region 152159	1830 bp downstream
Tssr152160	transcription start site region 152160	1784 bp downstream
Tssr152161	transcription start site region 152161	1768 bp downstream
Tssr152162	transcription start site region 152162	1747 bp downstream
Tssr152163	transcription start site region 152163	1730 bp downstream
Tssr152164	transcription start site region 152164	1685 bp downstream
Tssr152165	transcription start site region 152165	1612 bp downstream
Tssr152166	transcription start site region 152166	1576 bp downstream
Tssr152167	transcription start site region 152167	1544 bp downstream
Tssr152168	transcription start site region 152168	1515 bp downstream
Tssr152169	transcription start site region 152169	1462 bp downstream
Tssr152170	transcription start site region 152170	1354 bp downstream
Tssr152171	transcription start site region 152171	1310 bp downstream
Tssr152172	transcription start site region 152172	1207 bp downstream
Tssr152173	transcription start site region 152173	1192 bp downstream
Tssr152174	transcription start site region 152174	1158 bp downstream
Tssr152175	transcription start site region 152175	1123 bp downstream
Tssr152176	transcription start site region 152176	934 bp downstream
Tssr152177	transcription start site region 152177	754 bp downstream
Tssr154085	transcription start site region 154085	1805 bp upstream
Tssr154086	transcription start site region 154086	1259 bp upstream
Tssr154087	transcription start site region 154087	1038 bp upstream
Tssr154088	transcription start site region 154088	1009 bp upstream
Tssr154089	transcription start site region 154089	891 bp upstream
Tssr154090	transcription start site region 154090	831 bp upstream