rs261745723 SNP Detail

Summary

• ID
  rs261745723
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66213098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGGGACG GGGGGTGCTG
  ACAGGGTACC CAGGAGGCAG AACAGTGGGA ACTTGGGTCA GTTTCTGTGT GGCCACAGGG
  GGATACAGGC TGGAGTACAC ACAATGCCTT ACTCTACTTC TCTGGGTCCC AGCTAGAGGA
  GTTTCTAAAC CAGAGCTCAC CCTTCTACTT CTGGATGAAC GGCGACCGCA TCGACTCCCT
  K
  CTGGAGAGTG ACCGGCAGCA GAGCCAAGTC CTGGATGCCA TGCAGGACAG CTTTGCTCGG
  GCATCTGGCA TCATAGACAC GCTCTTTCAG GACCGGTTCT TCGCCCGTGA GCTTCATGAC
  CCCCACTACT TCTCCCCCAT CGGCTTCCCA CACAAGAGGC CTCATTTCTT ATATCCCAAG
  TCCCGCTTGG TCCGCAGCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367422	MGP_WTSI_14_66594486	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261745723					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367422	MGP_WTSI_14_66594486	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66213098 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Tssr126267	transcription start site region 126267	1387 bp downstream
Tssr126268	transcription start site region 126268	733 bp downstream
Tssr126269	transcription start site region 126269	671 bp downstream
Tssr126270	transcription start site region 126270	56 bp downstream
Tssr126271	transcription start site region 126271	29 bp downstream
Tssr126272	transcription start site region 126272	13 bp downstream
Tssr126273	transcription start site region 126273	3 bp upstream
Tssr126274	transcription start site region 126274	47 bp upstream
Tssr126275	transcription start site region 126275	56 bp upstream
Tssr126276	transcription start site region 126276	89 bp upstream
Tssr126277	transcription start site region 126277	154 bp upstream
Tssr126278	transcription start site region 126278	190 bp upstream
Tssr126279	transcription start site region 126279	1251 bp upstream
Tssr126280	transcription start site region 126280	1281 bp upstream
Tssr129265	transcription start site region 129265	755 bp upstream
Tssr129266	transcription start site region 129266	722 bp upstream
Tssr129267	transcription start site region 129267	706 bp upstream
Tssr129268	transcription start site region 129268	640 bp upstream
Tssr129269	transcription start site region 129269	49 bp downstream
Tssr129270	transcription start site region 129270	70 bp downstream
Tssr129271	transcription start site region 129271	114 bp downstream
Tssr129272	transcription start site region 129272	1286 bp downstream