rs261752193 SNP Detail

Summary

• ID
  rs261752193
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133270875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGTTTCA GGCTTGGCCC
  ATCACAGTGG GAAAGACAAG GAGCAAAAGC GTAGGGAGCC GGGCGGTGGT GGCACACGCC
  TTTAATCCCA GCACTCAGGA GGCAGAGGAG GCGGATTTCT GAGTTCGAGG CCAGCCTGGT
  CTACAGAGTG AGTTCCAGGA CAGCCAGGGC TATACAAAAA AACCAAGTCT CGAAAAACAA
  M
  AAAAAAAAAA AAAGCAAAGC TTAGGGAGAT GGTCACGTCA CATCCACAGC AAGCAGGGAG
  CACTGAAAGA GTGTCTTGGC TCAAGTGTTT TATGACAGGC CCATGCTCAG TCGACTCCTG
  GGGAGAAGCC CAAGCTGGCG CAGGCCCCCA GTTAGCACGA CGACTCTCAC TTGCCCCAGC
  CCCAGCGAGA GGTTCTGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi5/Ianm	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
ss363318338	MGP_WTSI_4_133099479	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	C	C	C	A	C	C	C	C	A	A	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi5/Ianm	SJL/J	SM/J	SWR/J	ZALENDE/EiJ
rs261752193					SNP	A	C	C	C	C	A	C	C	C	C	A	A	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363318338	MGP_WTSI_4_133099479	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133270875 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15007	CpG island 15007	1837 bp proximal
Nudc	nudC nuclear distribution protein	within coordinates