rs261752579 SNP Detail

Summary

• ID
  rs261752579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100307786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGACGCC CTCTTCTGAA
  GACAGCTACA GTGTACTTAT TTATAATAAT AAATCAATCT TTGGGCTGCA GCGAGTGGGG
  TTGACTGGAG CAAGCAGAGG TCCTAAATTC AATTCCCAAC AAGCAGATGA AGACCCACAA
  CCATCTGTAC AGCTACAGTG TGTGCTCATA TACACTAAAT AAATAAATAA ATAAATAAAA
  M
  AAACCATGCT CACTAAAGCC ACTCAGCACC CGTGTCTAAA GCCTTCCCAT AATGCAAAAA
  AATGTAGCTG TCAGAGACTG GCTGCCTAAG TGAGACCTGC GGCTGATGAG TGCCGAGAGC
  GGAACTTGCC CTTGCTCTCC CCAGGACACA GGGTTCCCTG CATGGACCGC CACTGACCTC
  CTCCTCAGGA ATGGGGATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss395176201	MGP_WTSI_15_100240336	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs261752579					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395176201	MGP_WTSI_15_100240336	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100307786 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	705 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	254 bp downstream