rs261770481 SNP Detail

Summary

• ID
  rs261770481
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90628605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGC ATGTTCACCA GAGGACCCCT
  W
  AGCTGAGCCC GGACCCCTAA GCTGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325276373	CHEV_16_90831962	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261770481					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90628605 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8431	CpG island 8431			within coordinates
Eva1c	eva-1 homolog C			Intron
				Noncoding-Transcript-Variant
Rr519213	regulatory region 519213			594 bp distal
Rr519214	regulatory region 519214			1531 bp proximal
Tssr139312	transcription start site region 139312			1615 bp downstream
Tssr139313	transcription start site region 139313			1584 bp downstream
Tssr139314	transcription start site region 139314			1292 bp downstream
Tssr139315	transcription start site region 139315			839 bp downstream
Tssr139316	transcription start site region 139316			567 bp downstream
Tssr139317	transcription start site region 139317			493 bp downstream
Tssr139318	transcription start site region 139318			1054 bp upstream