rs261772573 SNP Detail

Summary

• ID
  rs261772573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32304532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTGCTT AGAAGGAATC
  TACTCTGGAA GGAGTCACCA AGAGGCTCAC ATCTCAGAAA TAGTTAATCA TGGTGTAGGA
  GACAAAATAA AACTGGCCTG AGCATTTTCC CTCCTAGAAG CACACACGGT CACTTTGCTC
  TCAATAGTTT GGGGGCCCAA CGAATGAACT CAGTTCCACT TTCAAAAGCA TTTCCGTACT
  R
  GGAAGACAAG GTTTCAGGTT TATCCAGATC AAGCCCACAC CTCCCAACAG CCTCTGCCGT
  GCTGTGAGCT CTCTTAGGGA CCATGTGCAC CCTCCAAGGG AACTACTGCA GGGCTTGGGT
  TATTTGGTAC CATCTTGAAA GCTGAGAACA CAAAAAAAAT GTCCCAGATC TCAGGGTTGC
  AAGTTTGAAT GTGTCTTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395859314	MGP_WTSI_16_32485800	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261772573					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395859314	MGP_WTSI_16_32485800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32304532 () rs orientation: forward

Symbol	Name	Function Class
Rr514710	regulatory region 514710	161 bp distal
Rr514711	regulatory region 514711	1418 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	1882 bp downstream
Tssr4847	transcription start site region 4847	1901 bp downstream
Tssr140806	transcription start site region 140806	454 bp downstream
Tssr140807	transcription start site region 140807	1438 bp downstream
Tssr140808	transcription start site region 140808	1454 bp downstream
Tssr140809	transcription start site region 140809	1481 bp downstream
Tssr140810	transcription start site region 140810	1511 bp downstream
Tssr140811	transcription start site region 140811	1929 bp downstream
Tssr140812	transcription start site region 140812	1953 bp downstream