rs261777972 SNP Detail

Summary

• ID
  rs261777972
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117550984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAAAGAG CATACAGAAA
  GGAGCCAGAA CTCTAGACAC ATAAAAAGCA GAGGATGGAA CTCACTTATC TGACATCAGT
  GGGAGGGGAG GGAGGCTTGA TGCCCGGCAT GGGGGATGCT AGAGCCACGT GAGGCAGGAG
  TGGGTAAGTG GGTGGCGGAG CACCCCCATA GAGGCAAAGG AGAGGAGGAA GAAGGGGGAT
  W
  GGATTGAGAG ATTGTGGAGG GGTAACTGGG AAGGGGGATA TCATTTAAAA TGTAAATGAA
  TAAAAAGATT AATTAAAAAA AAAAAGTCTC TGTTTCCCAG GGATGAAAGA TAGGGCTTCT
  CAGAGGGAGC CACTGACAGC AGGCTGTCAA TCATTGGGGG CTTTGACAAA GTGAGGGTAA
  GGCCAGAGCT GAGTCAGGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498919	CHEV_10_117152135	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261777972					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117550984 () rs orientation: forward

Symbol	Name	Function Class
Gm66624	predicted gene, 66624	884 bp downstream
Gm67727	predicted gene, 67727	1345 bp upstream
Rr212986	regulatory region 212986	984 bp distal
Rr212987	regulatory region 212987	617 bp proximal
Rr225986	regulatory region 225986	818 bp proximal
Rr385358	regulatory region 385358	1917 bp upstream
Tssr99470	transcription start site region 99470	159 bp downstream