rs261780548 SNP Detail

Summary

• ID
  rs261780548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127585614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTTTGAC AACTTTGTGA
  TGTCAGATAA CAGAGTAATA TACTGTGTAA CACACGCATT GCCAAATGAT ACTTTACTAT
  CGCTAATTCT ATTTTATTCC ACAAAAATAT GATGGCTTAT GGGTTTTGTA AAGAAAAAAA
  AATTGTTAGA TATTTGAACA GATCTTCCTG TACCTGGTGT GCCCTGAGAA ATCTCTCTTC
  Y
  CCTGGCCCTT TGGTTCCCCT TCCCAAGACA AACATGGTTA CTACTGCAGT CTGTTGGCCT
  TCTGTGTATT TGGTATTTAA AACTAGCAGA ATTAAAAAAA CTTTTGTTGA GCCTCTACAC
  ACCAGTGGCT TAAAAACCAA CCAAACAAAC AAACAAAAAA CAACTACTAC TCTTAAATTT
  GTTATGTTAA TTATTCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359647269	MGP_WTSI_3_127494883	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261780548					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359647269	MGP_WTSI_3_127494883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127585614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	1837 bp distal
Cpgi13801	CpG island 13801	1016 bp distal
Gm56817	predicted gene, 56817	1708 bp upstream
Gm65225	predicted gene, 65225	within coordinates
Rr398007	regulatory region 398007	1572 bp upstream
Rr584862	regulatory region 584862	1719 bp distal
Rr584863	regulatory region 584863	1151 bp distal
Rr584864	regulatory region 584864	within coordinates
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31602	transcription start site region 31602	1982 bp downstream
Tssr31603	transcription start site region 31603	1964 bp downstream
Tssr31604	transcription start site region 31604	1840 bp downstream
Tssr31605	transcription start site region 31605	1326 bp downstream
Tssr31606	transcription start site region 31606	1140 bp downstream
Tssr31607	transcription start site region 31607	916 bp downstream
Tssr31608	transcription start site region 31608	820 bp downstream
Tssr31609	transcription start site region 31609	781 bp downstream
Tssr31610	transcription start site region 31610	688 bp downstream
Tssr31611	transcription start site region 31611	575 bp downstream
Tssr35602	transcription start site region 35602	1747 bp upstream