rs261781840 SNP Detail

Summary

• ID
  rs261781840
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA GGAGAAACTT CAATACAAAA
  W
  GATTCCTTTC TCAGATGTAT GCGGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321701920	CHEV_5_137633982	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261781840					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190196 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	556 bp upstream
Tssr49319	transcription start site region 49319	392 bp downstream
Tssr49320	transcription start site region 49320	380 bp downstream
Tssr53954	transcription start site region 53954	462 bp upstream
Tssr53955	transcription start site region 53955	446 bp upstream
Tssr53956	transcription start site region 53956	427 bp upstream
Tssr53957	transcription start site region 53957	410 bp upstream
Tssr53958	transcription start site region 53958	355 bp upstream
Tssr53959	transcription start site region 53959	342 bp upstream
Tssr53960	transcription start site region 53960	276 bp upstream
Tssr53961	transcription start site region 53961	177 bp upstream
Tssr53962	transcription start site region 53962	159 bp upstream
Tssr53963	transcription start site region 53963	120 bp upstream
Tssr53964	transcription start site region 53964	80 bp upstream
Tssr53965	transcription start site region 53965	55 bp upstream
Tssr53966	transcription start site region 53966	804 bp downstream
Tssr53967	transcription start site region 53967	830 bp downstream