rs261786349 SNP Detail

Summary

• ID
  rs261786349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:99538527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTTTAT ATTAGGCCTG
  ATAAAATAAC CTAGTCCACA CACAAAAGCC CTTTGGAATA ATTATTTTTA AGATTTGCAC
  AGGTTTTAGT TTTCAAGTGT AATGGATGTG AACAGATTTG AGGCAGTTTG GCAAAACTGT
  GATACCATAG TTTAACTGAA GATATACCCT AATTTGACTG TGTGTGCGCG TGTGCGCGCG
  Y
  GTGTGTGTGA CTTGATTGCA TCAGAAAATG TTTTGACCTC CACCCCCCAC CCCATTTGCC
  TTTCACTTTT GTCTGGGGAT GATTTGCGGG AGTGACTTTA GTGAAGACAT GTCGTAGAGT
  CTTGGTTAAC CGATAATTAC ACAATTGACA AAATAAACTT GTGTGTTCAT AAGCAACACT
  TAGGAGTTGG CCCCTGTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J
ss392198166	MGP_WTSI_14_99700310	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J
rs261786349					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392198166	MGP_WTSI_14_99700310	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:99538527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6800	CpG island 6800	1241 bp distal
Klf5	Kruppel-like transcription factor 5	within coordinates
Rr291012	regulatory region 291012	474 bp proximal
Rr297571	regulatory region 297571	within coordinates
Tssr126883	transcription start site region 126883	543 bp upstream
Tssr126884	transcription start site region 126884	572 bp upstream
Tssr126885	transcription start site region 126885	597 bp upstream
Tssr126886	transcription start site region 126886	712 bp upstream
Tssr126887	transcription start site region 126887	808 bp upstream
Tssr126888	transcription start site region 126888	890 bp upstream