rs261787117 SNP Detail

Summary

• ID
  rs261787117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122966317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaccaggta aatgtttaca gtaaagataa
  agcagtcctg tctagggtca gcttagtgac aggcaaggat tttacacttt agtgttatac
  ctgtgaacct tgtgaaggct agcaccaggg ggttctgctc ttggcagacc tcaagaataa
  Y
  gtaatatcac aacccaccta atttcctagg ccttgctaaa ttcttatatg agtgtaactt
  ttaagtatct ggagaatctc cagttgtcag gagaatatac caacttgctt ttaatattca
  atgtagcctt actgaagatt tctatcttgg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934835	CHEV_6_122939376	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261787117					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122966317 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	1009 bp upstream
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	1995 bp proximal
Tssr58744	transcription start site region 58744	937 bp upstream
Tssr58745	transcription start site region 58745	992 bp upstream