rs261789306 SNP Detail

Summary

• ID
  rs261789306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72156998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAGCTAGC TTCAGCATGA
  AGAGGAAGAC CCTGAGCCCC AAAAAGGCAC TGCTTATATA CACCTCAGTG CAGCGTGTCC
  ACACCTGATT GGCTGCTCTC TCAGCACACC CCGGGATGGG CAGTGACTTG GCGCGAACAC
  ACTCTTGCAC ATGCGCATAT TGCTTATTTA CCAATTAGGC CACGCAGGCA CAGCGGAAAC
  Y
  GCTTCCCACA CCAGAGTAGA TACTTAGAAC TATCAATAGC TGAGTTACAC CCATACACAG
  GAATTTACTA TGGCCTAGGG GGAAGGTGGA CTATAGAATA GACTAGAATA GGAACTATTG
  CAAGGGCACA AAGCCCTTGC CCTTGACTTC TAAGATTAAG TGGACCTTAG ATGGGGCTGC
  TTTTTTTTTT TTTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss378014712	MGP_WTSI_9_72097523	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs261789306					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378014712	MGP_WTSI_9_72097523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72156998 () rs orientation: forward

Symbol	Name	Function Class
Rr383575	regulatory region 383575	891 bp upstream