rs261798542 SNP Detail

Summary

• ID
  rs261798542
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61330442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTGGCA TTTCTTAAGG
  GGAACTGTCG TTCATTCTTT TTTTTTTTTT TACGATCTCT CCTTGAATGT GCACCACAAG
  CCCATTCACA GTGCTGTTAG GAAGCTGCTG AGCCAATACT CTGCTTTCTC TGACAACTCT
  GCCACTGGTG TTCAGAGATG CCAACTCAGC AAGGATTCCC GGGGGGGGGG GGGGGGGGGG
  R
  ACAAGAATAA GTCAAAGGTG AGACAGGGCG TAACAGCAGA CAAGTTCTCA AAGACAAAGA
  CAGAGATGAA GAGAGACAAA GACTTCCACT GCCATTCTGG TTTTAAACTC TTTCTTTACC
  CACTTATTCT AAATAAAAAG GGAAGACTTA AGACATTAGA TATTTACAAT ATGGGTTCTA
  TACAATAGTA TCAGGCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325641576	CHEV_18_61357024	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261798542					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61330442 () rs orientation: forward

Symbol	Name	Function Class
Slc26a2	solute carrier family 26 (sulfate transporter), member 2	within coordinates
Tssr153542	transcription start site region 153542	1139 bp upstream
Tssr153543	transcription start site region 153543	972 bp upstream
Tssr153544	transcription start site region 153544	813 bp upstream
Tssr153545	transcription start site region 153545	335 bp downstream