rs261800119 SNP Detail

Summary

• ID
  rs261800119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109906118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTGGCT GTCAGGCTGC
  TGAGCTATGG CCCTCCTACC TTAAGTCCTA TGTGATTTCC ATCTAACTGC TCAGGTTTAT
  GTCTCCTTGG ATAAACTGGC AGATGTGCCT TTCAGTGATT TGCTCTAGCA AATTCTTGAG
  TCTAAGGAGA AGGCTTGGGA GCATACAGCT ATGTCGCTGG AGGATGGTCT TGTGCGCCCA
  Y
  GCAGACTGTG CCGTCTCTGG GGAGTTAGTA TCAAAGCCGA ACTGAATTGT TGGACAAGCC
  ACTTGGTATA GGATTATGTG GGGAAAAAAT GACATGCAAT TTGCATATGT AAGAAAAGAC
  AGCATCAGTC AGAGCCAAGC TGTATGTGCA AAGTACACCC TGGCTTCTGA GGACTTAGTA
  TGAACAAATG AACCACCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322395864	CHEV_7_117450425	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261800119					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109906118 () rs orientation: forward

Symbol	Name	Function Class
Rr159222	regulatory region 159222	1117 bp distal
Rr159223	regulatory region 159223	718 bp distal
Rr159224	regulatory region 159224	within coordinates
Sbf2	SET binding factor 2	1102 bp downstream