rs261816296 SNP Detail

Summary

• ID
  rs261816296
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115077959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCCTGCC TTCCCCTCAC
  AACTACGTGA AAGAACGGGG ATTCTAAAAC TCTTGTAAGA GAAAGAGCCG AAGTGGTCAA
  TACATCTGGG CTCTCACCCA GGGGCCAAGT TCTGGCTCGG TTTCCAGCCC ATTCCTACAC
  AACATGCCCG TCCACCCCCA AATGACCTGT TAATCCTTTT TTTAACCTGT TTCCAACCCT
  W
  GCCTCCAGCG TCCAGAGTCC ACGTCACTCG GCTCTGGCCC TTCCGTTTTC CTGTCCCCAA
  GCCCCACTCA AAGTTCTCAG GCCTCAGCCC TTTGCGTGGT TCCTCGGCCG TCTAAGCGCT
  GTAGTTTGCA AACTGCAAAG CTCACAACCA CCCCCTGCCG AGGAAGGCGT CCCCAACGAC
  AGGCGTCAGC GTCTGTCCCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384823246	MGP_WTSI_11_115048447	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261816296					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384823246	MGP_WTSI_11_115048447	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115077959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4111	CpG island 4111	within coordinates
Nat9	N-acetyltransferase 9 (GCN5-related, putative)	within coordinates
Rr403112	regulatory region 403112	69 bp upstream
Rr459794	regulatory region 459794	189 bp proximal
Rr459795	regulatory region 459795	365 bp proximal
Rr459796	regulatory region 459796	701 bp proximal
Rr459797	regulatory region 459797	1456 bp proximal
Rr459798	regulatory region 459798	1586 bp proximal
Tmem104	transmembrane protein 104	354 bp upstream
Tssr3728	transcription start site region 3728	435 bp upstream
Tssr3729	transcription start site region 3729	1522 bp downstream
Tssr105849	transcription start site region 105849	348 bp upstream
Tssr111731	transcription start site region 111731	125 bp downstream
Tssr111732	transcription start site region 111732	157 bp downstream
Tssr111733	transcription start site region 111733	188 bp downstream
Tssr111734	transcription start site region 111734	694 bp downstream
Tssr111735	transcription start site region 111735	726 bp downstream
Tssr111736	transcription start site region 111736	1631 bp downstream