rs261816340 SNP Detail

Summary

• ID
  rs261816340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52139229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATGCTA AGTGAACTCC
  AGATCTGGCG CGCGACCTTT CCAACTCCAC CCCGCACCTC GCCTCCTTCC CCGCACCGGG
  GCTCACTGAG CGGCTCCCTT TTCCCCACTC GCCCGCCGAG GGCTTCCCCC CACGCCGCCT
  TCGTCCTCTA AAGCGGGCCA TGCCCACGAC CTGGACTAAA GTGTCTAACG AGGGACTCCT
  R
  CCGGGCAGGT GTGCGGGAGA GGCAAAGACG CCAAGTAAGT CCGCATCCCG GCCATGACCC
  TCACTTCACC AGCCCAGTCC TCCCGAATGT CTGAGCGCGC TCGAGAGAAG GGCCAGCAAG
  ACCCCGGCAC GCGAGGGGCG CAGAGTCGCC CCAGCCGGGG CCACTGAGAA GTTTGGATCG
  GTTCCGCATC CGCAGAAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398453325	MGP_WTSI_17_51971526	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261816340					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398453325	MGP_WTSI_17_51971526	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52139229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	within coordinates
Gm6934	predicted gene 6934	618 bp upstream
Rr370288	regulatory region 370288	1004 bp upstream
Rr528751	regulatory region 528751	within coordinates
Rr528752	regulatory region 528752	461 bp proximal
Rr528753	regulatory region 528753	760 bp proximal
Rr528754	regulatory region 528754	1079 bp proximal
Satb1	special AT-rich sequence binding protein 1	within coordinates
Tssr145166	transcription start site region 145166	556 bp upstream
Tssr145167	transcription start site region 145167	577 bp upstream
Tssr145168	transcription start site region 145168	614 bp upstream
Tssr145169	transcription start site region 145169	806 bp upstream
Tssr145170	transcription start site region 145170	819 bp upstream
Tssr145171	transcription start site region 145171	1041 bp upstream
Tssr148679	transcription start site region 148679	306 bp upstream
Tssr148680	transcription start site region 148680	406 bp downstream
Tssr148681	transcription start site region 148681	434 bp downstream
Tssr148682	transcription start site region 148682	465 bp downstream
Tssr148683	transcription start site region 148683	491 bp downstream
Tssr148684	transcription start site region 148684	874 bp downstream
Tssr148685	transcription start site region 148685	912 bp downstream
Tssr148686	transcription start site region 148686	1004 bp downstream
Tssr148687	transcription start site region 148687	1049 bp downstream
Tssr148688	transcription start site region 148688	1077 bp downstream