rs261820666 SNP Detail

Summary

• ID
  rs261820666
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43444607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTTGGG CTACGGTTCA
  GTGACTTGTC CAGGATTACA GTGAGGACAC ACAGAGAGGA CTGAAAAGGG CCTTGCAGAG
  GGTGACATGC TGTGGGCTTA GACAAGGCAC AGGAGCAAAC ACGCAGCAAC CGAGGCAGTC
  TCTTCTGTTG TCATTATTCT GAAAATCTTG GGTCTTAGTT TTTATGCCTA ATAGGTATTC
  M
  TCAAAGGATC CAAGCTCAGA TTAGGACAGG AGAGGCAGCT CAAGGATCAG CATTTAAAGA
  AATAATTAAC CTTAATAATA TTTTCCAGGC TTCCTTTCAT TTGGATTTCC AAGTTCTAAC
  TCTTTCTGTG GTTAATCATA CTATCAAGAT TTATGACCTC AAAAATTTTA AAGTCCATTT
  ATTAGGCAGT AAAATATTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320267199	CHEV_2_43410115	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261820666					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43444607 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	734 bp upstream
Rr396942	regulatory region 396942	1868 bp upstream
Rr556278	regulatory region 556278	within coordinates
Rr556279	regulatory region 556279	442 bp proximal
Rr556280	regulatory region 556280	770 bp proximal
Tssr17589	transcription start site region 17589	726 bp upstream
Tssr17590	transcription start site region 17590	750 bp upstream
Tssr17591	transcription start site region 17591	767 bp upstream