rs261824734 SNP Detail

Summary

• ID
  rs261824734
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106862973 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTGGATG TCTGTAAAGG
  TTGGAAGGTA AGGTGGCTCT GGGAATGGCC TAGCACGCTT CCACGCGGTA GTCGCTCAAA
  AGTTTCAAAC AAGACCTTGT CCTACTGGCC GTGCCACTGG GTCGCGTCGC TCCAGGTCTC
  CCCTCCTCCC CTCCCCCTCG AAGTAGTGTC CCTGCCACTC CGCAGTTCCA CCACCCACGC
  R
  GGCCCCCACG CTCACCTGTT GCAGCACTTT GTCCAGGGAC TCCGCCCGCG CTAGGCTGTC
  TGCGCTGAGT CCACTCGCCT CGCGGCATTG TGGACTCAGG GCAGCCGCCT CGGCGCGAAC
  TAGCGACTTG TGCAGCGTCC CCACCTAAAA GCACCGAGGG TAACCCCATG AGCCGCTGTG
  CCTCAACAGG CTCTGAAGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375925159	MGP_WTSI_8_108660241	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261824734					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375925159	MGP_WTSI_8_108660241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106862973 () rs orientation: forward

Symbol	Name	Function Class
1810019D21Rik	RIKEN cDNA 1810019D21 gene	within coordinates
Cpgi20965	CpG island 20965	within coordinates
Cpgi20966	CpG island 20966	1669 bp proximal
Esrp2	epithelial splicing regulatory protein 2	Intron
Rr669096	regulatory region 669096	771 bp distal
Rr669097	regulatory region 669097	430 bp proximal
Rr669098	regulatory region 669098	623 bp proximal
Tssr79219	transcription start site region 79219	910 bp downstream
Tssr79220	transcription start site region 79220	884 bp downstream
Tssr79221	transcription start site region 79221	861 bp downstream
Tssr79222	transcription start site region 79222	829 bp downstream
Tssr79223	transcription start site region 79223	771 bp downstream
Tssr79224	transcription start site region 79224	452 bp downstream
Tssr79225	transcription start site region 79225	388 bp downstream
Tssr79226	transcription start site region 79226	717 bp upstream
Tssr82755	transcription start site region 82755	1398 bp upstream
Tssr82756	transcription start site region 82756	1381 bp upstream
Tssr82757	transcription start site region 82757	451 bp downstream
Tssr82758	transcription start site region 82758	549 bp downstream
Tssr82759	transcription start site region 82759	1027 bp downstream