rs261827881 SNP Detail

Summary

• ID
  rs261827881
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33595995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAAATGCA AATCAGGTTA TTAGCGGCGT
  CGAGAAAAAA AGTAGTCATT TATCTTTAAT GCTCCCGCAC TCCAAGTTCA ACTGCTTTAT
  AAGAACATGC AAGGAGGAAA AAAAGTGTTA CAAGAGCTAA AACCCGTAAA GCCCCCCCCC
  M
  CACACACACA CACCCCGGCC GCCCGCCGCA GCAGCAACCC TGAAAGAGTA ATCAAGTGTA
  AGGGTTTTAT AAAGGGAGGG GGAGCTTGCA TGCACCAAAG TGCATTTAAT GCAAAGGAAC
  AAAACAGCTC TCAACAACTA ACAAGAACAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325579796	CHEV_18_33622596	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261827881					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33595995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	561 bp proximal
Gm10549	predicted gene 10549	1221 bp upstream
Nrep	neuronal regeneration related protein	within coordinates
Tssr152760	transcription start site region 152760	398 bp upstream
Tssr152761	transcription start site region 152761	473 bp downstream
Tssr152762	transcription start site region 152762	508 bp downstream
Tssr152763	transcription start site region 152763	673 bp downstream
Tssr152764	transcription start site region 152764	700 bp downstream
Tssr152765	transcription start site region 152765	821 bp downstream
Tssr152766	transcription start site region 152766	879 bp downstream
Tssr152767	transcription start site region 152767	916 bp downstream
Tssr152768	transcription start site region 152768	1065 bp downstream
Tssr152769	transcription start site region 152769	1423 bp downstream