rs261830605 SNP Detail

Summary

• ID
  rs261830605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60961891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCGTCTTC CTCTCCTCCC
  CCCCCCCCCC CCCCCCCCCC CCGAGAGACA GGGTTTCTCT GTGCAGCCCT GGCTGTCCTG
  GAACTCACTC TGTAAACCAG GCTGGCCTCA AACTCAGAAA TCCGCCTGCC TCTGCCTCCC
  GAGTGCAGGG ATTAAAGGCA TGCACCACCA CTGCCTGGCA AGCCTGCTTC TTCTCAGTCA
  Y
  AGCAAAAAGA CACTGTTTAG GTACACCTTG TATGAACTCT CTTTTGAGTG CCACCTTCTA
  GAAATGGGCT CTCAATTTAT GTTGCCTTGA TCCTCAGACT TTTGAGCCTC CATAACTGTC
  AGAGAAATAG GTTTGTTGTT TATAAGCCAC TCTGTTTAAG GCATTATCCT ACAGCATCCC
  AAATAGACTA AAATAATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323327727	CHEV_10_60588860	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261830605					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60961891 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	877 bp upstream
Rr219927	regulatory region 219927	1510 bp proximal
Sgpl1	sphingosine phosphate lyase 1	within coordinates