rs261833500 SNP Detail

Summary

• ID
  rs261833500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78717400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTAAGGG AGACAAGGAA AAGCGGGCCG
  TGGTTCCAGC CAACTGGGCG GGGTCGGATC AGGAAGCCCG CACCCAGTAG GACCCCGAGT
  CCCGCGGATG GCCGGCAGAG GGCGCTAGGG TACCAGGCGG GGGCGGGGCT GCGCTTGCTT
  Y
  TGCCGCGCAG GCGCAATCGT GTCGCTCGCG GTGTCTCCAG TTGGCGTCCG CCGGGAAGGC
  GGGTGAGCCG CGCTGCGCGG GCCCTTGGGC GGGGACTCGG GGGGCGGCAG GGGCGGGCTG
  GGGATTACCG AGGCTGCCTG CAGGGCCGGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323757673	CHEV_11_78640076	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261833500					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78717400 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3360	CpG island 3360	within coordinates
D11Bhm79	DNA segment, Chr 11, Boehm 79	1996 bp distal
Lyrm9	LYR motif containing 9	21 bp upstream
Rr452074	regulatory region 452074	1403 bp distal
Rr452075	regulatory region 452075	within coordinates
Rr452076	regulatory region 452076	32 bp distal
Rr452077	regulatory region 452077	21 bp proximal
Rr452078	regulatory region 452078	30 bp proximal
Rr452079	regulatory region 452079	204 bp proximal
Rr452080	regulatory region 452080	1700 bp proximal
Rr452081	regulatory region 452081	1839 bp proximal
Tssr103332	transcription start site region 103332	1 bp upstream