rs261837543 SNP Detail

Summary

• ID
  rs261837543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70822181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCACCTCTC GCAGGGATGC GAGTGACTGC
  GGACAAAGCA GAGAGCCGCG ACACCTTCCT GTCCCACTCT GAGCGCCTGC CTGGTCCTGG
  CTGTGGGAGG GCAACAGCAT CTTTAAAGGA GGATGAGGGA TGCCTGGAGA ATGCAACACC
  Y
  GGCTTAGGGA AGAAAGTCAC TTCCCCGCTT TCATTGTTTT CGGGCTTTAA CCATATGCAC
  TTTACACTCC CATTCCCAAA TACTTGACTC GTTCTGTCCT GATTCTGTTG CGACAGGTAA
  AACGACTTTC AAAAGAGATG CCTACATTTA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321816169	CHEV_6_70795191	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261837543					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70822181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17515	CpG island 17515	within coordinates
Eif2ak3	eukaryotic translation initiation factor 2 alpha kinase 3	within coordinates
Rr631844	regulatory region 631844	634 bp distal
Rr631845	regulatory region 631845	85 bp distal
Tssr56977	transcription start site region 56977	618 bp downstream
Tssr56978	transcription start site region 56978	603 bp downstream