rs261838033 SNP Detail

Summary

• ID
  rs261838033
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172035336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACACCCCA TTTTGCCTTC AGGTCCAGCT
  GATCAGAGAC CCTTCCAGAA GCCTAAGATG AGCCCCTTCT TCTGGGAGGA GCAGGTCCTG
  GTCCTGTGCC TTAGGTTTCA TATATAGTTC TTCTCTTTGC TCCTCTTacc cccagcccca
  S
  ccccaccccc CACATGGCTG CCCATTGCTC CTTTGAGGGT AACTAATATA CCCTCAGAAG
  TTGCTTTTGT TTCTGAGTCG CTGTAGGGTC GGAATCTATC ATGTTGACCC ATCTTTGAGA
  CACAGAGTGA CTGTACACTT TTGCATAGAC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320123212	CHEV_1_174137900	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs261838033					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172035336 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1038	CpG island 1038	816 bp distal
Gm17224	predicted gene 17224	within coordinates
Pea15a	proliferation and apoptosis adaptor protein 15A	1038 bp upstream
Rr396578	regulatory region 396578	229 bp downstream
Rr423485	regulatory region 423485	976 bp distal
Rr423486	regulatory region 423486	475 bp distal
Tssr294	transcription start site region 294	1136 bp upstream
Tssr295	transcription start site region 295	1086 bp upstream
Tssr296	transcription start site region 296	1010 bp upstream
Tssr297	transcription start site region 297	976 bp upstream
Tssr15164	transcription start site region 15164	1104 bp upstream
Tssr15165	transcription start site region 15165	1014 bp upstream
Tssr15166	transcription start site region 15166	983 bp upstream
Tssr15167	transcription start site region 15167	63 bp upstream