rs261842833 SNP Detail

Summary

• ID
  rs261842833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129470032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATATTTT TATCTGAGTC
  TCTTTCCATT TCAGGTTGCA CGAGCCCGAG AAGAACGCCA GGGAAATAAC CCAGGTACAG
  TCTTTGGTGA GCTGCCCTTC CTGGGAAACT CGGGGTGTGA TTTCCTTGCT TCAACCGGAG
  TTGCGGATCC AGTTCTAAAT TAAGTCTCTG GGCTAGGGAG GAGGAGCTGT GCATTACTGA
  R
  TCACCCATGA GTCCTCTGCA TCCTTCTCCA GCTCCAGCTG GAGAGTCTGG GGCTCCTGGG
  TTCGTTGTGA ATCATTGCAT AACATGGGGT ACCAGTGTCC CACGTAAACG ATACCCAGAG
  TCAGATTCCA GCTTCCTTTG TTGCTGCACA TTCCTGCTTC TGGGCCCCTG CTCTAGCCAG
  TTCTACCACT GGGAGCCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355643419	MGP_WTSI_2_129453848	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs261842833					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355643419	MGP_WTSI_2_129453848	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129470032 () rs orientation: forward

Symbol	Name	Function Class
Rr564960	regulatory region 564960	1875 bp distal
Rr564961	regulatory region 564961	836 bp distal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	1869 bp upstream
Tssr20163	transcription start site region 20163	1889 bp upstream
Tssr20164	transcription start site region 20164	1950 bp upstream
Tssr20165	transcription start site region 20165	1980 bp upstream
Tssr20166	transcription start site region 20166	1999 bp upstream
Tssr26273	transcription start site region 26273	1870 bp downstream
Tssr26274	transcription start site region 26274	1930 bp downstream